Our cheapest offers for flights from Philippines to Japan

Here you can compare cheap flights from Philippines to Japan for one-way or return trips. The following offers were searched for and found on idealo during the last few days. Or start your own flight search to Japan. Prices and availability may change at any time.

Flights from Manila (MNL) to Tokyo Haneda (HND)

	Outbound	Return	Airlines	Shop	Baggage	Price
Manila Tokyo Haneda	Outbound 04/12/25 1 Stopover (HKG) CX0912, CX0542 12h 35min	Return 04/27/25 1 Stopover (HKG) CX0543, CX0901 26h 15min	Cathay Pacific Airways		?	$364 found yesterday
Best option Manila Tokyo Haneda	Outbound 03/29/25 direct NH0870 04h 10min	Return 04/02/25 direct NH0869 04h 45min	ANA All Nippon Airways		?	$445

Flights from Manila (MNL) to Tokyo Narita (NRT)

	Outbound	Return	Airlines	Shop	Baggage	Price
Best option Manila Tokyo Narita	Outbound 03/29/25 direct ZG0096 04h 15min	Return 04/02/25 direct GK0041 05h 00min	ZIPAIR Tokyo		?	$219
Manila Tokyo Narita	Outbound 03/29/25 direct ZG0096 04h 15min	Return 04/02/25 direct Z20193 04h 40min	ZIPAIR Tokyo			$231