Flights from New York to San Juan (Puerto Rico)

Our cheapest offers for flights from New York to San Juan (Puerto Rico)

Here you can compare cheap flights from New York (JFK) to San Juan (Puerto Rico) (SJU) for one-way or return trips. The following offers were searched for and found on idealo during the last few days. Or start your own flight search to San Juan (Puerto Rico). Prices and availability may change at any time.

Outbound Return Airlines Shop Baggage Price
New York
San Juan (Puerto Rico)
Outbound
12/25/25
1 Stopover (ATL)
F94731, F92872
10h 37min
Return
-
Frontier Airlines
$168
Best option
New York
San Juan (Puerto Rico)
Outbound
04/03/26
direct
F93547
03h 54min
Return
04/16/26
direct
B62004
04h 14min
Frontier Airlines ?
$284
New York
San Juan (Puerto Rico)
Please note: transfer for connecting flight
Outbound
12/25/25
3 Stopovers (MSP, TPA, ILG)
SY0568, SY0211, XP0533, XP0584
37h 11min
Return
12/30/25
1 Stopover (MSP)
SY0762, SY0567
18h 20min
Sun Country Airlines, Avelo Airlines
$898
New York
San Juan (Puerto Rico)
Outbound
04/03/26
direct
B60403
03h 56min
Return
04/16/26
direct
B62404
04h 08min
JetBlue Airways ?
$290
New York
San Juan (Puerto Rico)
Outbound
12/25/25
direct
B61903
04h 00min
Return
12/28/25
1 Stopover (MIA)
F94995, F91810
21h 44min
JetBlue Airways ?
$317
found yesterday
New York
San Juan (Puerto Rico)
Outbound
12/25/25
1 Stopover (ATL)
F94731, F92872
10h 37min
Return
12/28/25
1 Stopover (MIA)
F94995, F91810
21h 44min
Frontier Airlines
$388
found yesterday
New York
San Juan (Puerto Rico)
Outbound
12/25/25
1 Stopover (ATL)
F94731, F92872
10h 37min
Return
12/28/25
direct
F93546
04h 15min
Frontier Airlines ?
$447
found yesterday
New York
San Juan (Puerto Rico)
Outbound
01/10/26
1 Stopover (MIA)
AA1032, AA2682
09h 45min
Return
01/24/26
1 Stopover (MIA)
AA2035, AA2225
13h 03min
American Airlines ?
$457
New York
San Juan (Puerto Rico)
Outbound
12/25/25
direct
F93545
03h 54min
Return
12/28/25
direct
F93546
04h 15min
Frontier Airlines
$508
found yesterday
New York
San Juan (Puerto Rico)
Outbound
12/25/25
direct
F93545
03h 54min
Return
12/28/25
direct
F93546
04h 15min
Frontier Airlines ?
$617
found yesterday
Prices based on recent searches, subject to last-minute changes
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Tips and tricks to help you find cheap flights from New York to San Juan (Puerto Rico)

Favorite airline: Delta
The majority of passengers on the route New York – San Juan (Puerto Rico) prefer to fly with Delta.
Delta
59 %
American Airlines
14 %
Avianca
14 %
Direct flights are cheaper
Compared to flights with a stopover, direct flights are $207.00 cheaper on this route.
non stop flight
1 stop
2 stops
04h 19min
06h 37min
15h 23min
$251
$458
$654
The favorite connection is non-stop
Direct flights are especially popular on this route. 67 % of travelers will book a direct flight.
Route
bookings
Direct flights
04h 19min, from $251
67 %
2 stopovers Minneapolis - St. Paul International Airport, MN Orlando International Airport, FL
15h 23min, from $654
17 %
1 stopover Charlotte Douglas International Airport, NC
14h 06min, from $515
11 %

Important flight information

Flight information: New York - San Juan (Puerto Rico)

Cheapest outbound flight from $167.97
Roundtrip from $283.98
Flight duration min. 03:44 / max. 04:06
Return flight duration min. 03:55/ max. 04:08
Distance 2581 km
Flights per week 64
Departure airport Airport New York - John F. Kennedy International Airport, NY (JFK)
Arrival airport Airport San Juan - Luis Muñoz Marín International Airport (SJU)
Destination country Flights to Puerto Rico
Alternative routes to Puerto Rico
Alternative flights to San Juan (Puerto Rico)
Flight destinations with a similar price
Flight destinations with a similar price