Flights from Jacksonville, Florida to San Juan (Puerto Rico)

Our cheapest offers for flights from Jacksonville, Florida to San Juan (Puerto Rico)

Here you can compare cheap flights from Jacksonville, Florida (JAX) to San Juan (Puerto Rico) (SJU) for one-way or return trips. The following offers were searched for and found on idealo during the last few days. Or start your own flight search to San Juan (Puerto Rico). Prices and availability may change at any time.

Outbound Return Airlines Shop Baggage Price
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/19/25
2 Stopovers (CLT, MIA)
AA1834, AA3068, AA1341
26h 11min
Return
09/29/25
2 Stopovers (MIA, CLT)
AA1329, AA1069, AA1925
20h 36min
American Airlines ?
$246
Best option
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
07/08/25
1 Stopover (CLT)
AA1522, AA2830
06h 16min
Return
08/07/25
direct
F93305
03h 20min
American Airlines ?
$285
Jacksonville, Florida
San Juan (Puerto Rico)
Pay attention to transfer at connecting flight
Outbound
07/08/25
3 Stopovers (IND, EWR, ORD)
G40618, NK1558, NK1183, NK1635
36h 50min
Return
08/07/25
2 Stopovers (FLL, TYS)
NK1397, G40503, G43045
27h 18min
Allegiant Air, Spirit Airlines
$425
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (CLT)
AA3129, AA2674
16h 35min
Return
11/17/25
2 Stopovers (MIA, CLT)
AA1501, AA2960, AA2713
17h 48min
American Airlines ?
$246
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/19/25
2 Stopovers (CLT, MIA)
AA1490, AA3068, AA1613
25h 41min
Return
09/29/25
2 Stopovers (MIA, CLT)
AA1329, AA1069, AA1925
20h 36min
American Airlines ?
$268
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (JFK)
B60678, B60303
08h 45min
Return
11/17/25
1 Stopover (PHL)
F91015, F93479
14h 55min
JetBlue Airways ?
$291
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
07/08/25
1 Stopover (CLT)
AA1834, AA2830
14h 55min
Return
08/07/25
1 Stopover (MIA)
AA1329, AA0416
04h 44min
American Airlines ?
$307
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
07/08/25
1 Stopover (CLT)
AA1522, AA2830
06h 16min
Return
08/07/25
1 Stopover (MIA)
AA1329, AA3955
14h 25min
American Airlines ?
$315
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (MIA)
AA2711, AA1613
06h 13min
Return
11/17/25
1 Stopover (CLT)
AA2150, AA2713
08h 23min
American Airlines ?
$317
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/19/25
2 Stopovers (CLT, MIA)
AA1490, AA3068, AA1341
24h 11min
Return
09/29/25
2 Stopovers (MIA, CLT)
AA1341, AA1521, AA2991
09h 41min
American Airlines ?
$338
Prices based on recent searches, subject to last-minute changes
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Tips and tricks to help you find cheap flights from Jacksonville, Florida to San Juan (Puerto Rico)

Favorite airline: Frontier Airlines
The majority of passengers on the route Jacksonville, Florida – San Juan (Puerto Rico) prefer to fly with Frontier Airlines.
Frontier Airlines
46 %
American Airlines
38 %
United Airlines
15 %
Direct flights are the cheapest connection
Compared to direct flights, flights with a stopover on this route are on average 46 % more expensive.
non stop flight
1 stop
2 stops
03h 07min
05h 36min
16h 24min
US$256
US$472
US$1,280
The favorite connection is non-stop
46 % of all bookings on the route Jacksonville, Florida to San Juan (Puerto Rico) are for non-stop flights.
Route
bookings
Direct flights
03h 07min, from US$256
46 %
1 stopover Charlotte Douglas International Airport, NC
05h 36min, from US$472
31 %
1 stopover Houston - George Bush Intercontinental Airport, TX
08h 42min, from US$574
15 %

Important flight information

Flight information: Jacksonville, Florida - San Juan (Puerto Rico)

Roundtrip from US$245.57
Distance 2076 km
Departure airport Airport Jacksonville, Florida (JAX)
Arrival airport Airport San Juan - Luis Muñoz Marín International Airport (SJU)
Destination country Flights to Puerto Rico
Alternative flights to San Juan (Puerto Rico)
Flight destinations with a similar price