Flights from Jacksonville, Florida to San Juan (Puerto Rico)

Our cheapest offers for flights from Jacksonville, Florida to San Juan (Puerto Rico)

Here you can compare cheap flights from Jacksonville, Florida (JAX) to San Juan (Puerto Rico) (SJU) for one-way or return trips. The following offers were searched for and found on idealo during the last few days. Or start your own flight search to San Juan (Puerto Rico). Prices and availability may change at any time.

Outbound Return Airlines Shop Baggage Price
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (CLT)
AA3129, AA2674
16h 35min
Return
11/17/25
2 Stopovers (MIA, CLT)
AA1501, AA2960, AA2713
17h 48min
American Airlines ?
$246
Best option
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (MIA)
AA2711, AA1613
06h 13min
Return
11/17/25
1 Stopover (CLT)
AA2150, AA2713
08h 23min
American Airlines ?
$317
Jacksonville, Florida
San Juan (Puerto Rico)
Pay attention to transfer at connecting flight
Outbound
10/18/25
2 Stopovers (ORF, MCO)
MX0401, NK1575, NK3159
19h 04min
Return
11/17/25
2 Stopovers (MCO, RIC)
NK3164, NK1792, MX0403
11h 48min
Breeze Airways, Spirit Airlines
$652
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (JFK)
B60678, B60303
08h 45min
Return
11/17/25
1 Stopover (PHL)
F91015, F93479
14h 55min
JetBlue Airways ?
$291
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (CLT)
AA3129, AA2674
16h 35min
Return
11/17/25
1 Stopover (MIA)
AA1870, AA3014
06h 31min
American Airlines ?
$324
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/04/25
2 Stopovers (CLT, MIA)
AA1834, AA3068, AA0967
31h 16min
Return
09/28/25
1 Stopover (MIA)
AA3089, AA0379
10h 23min
American Airlines ?
$383
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/04/25
2 Stopovers (CLT, MIA)
AA1615, AA0770, AA1613
16h 16min
Return
09/28/25
1 Stopover (MIA)
AA1613, AA0379
04h 58min
American Airlines ?
$413
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/04/25
2 Stopovers (CLT, MIA)
AA1615, AA1165, AA1341
14h 46min
Return
09/28/25
1 Stopover (MIA)
AA0967, AA0416
06h 25min
American Airlines ?
$434
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
09/04/25
1 Stopover (PHL)
F94022, F94462
08h 27min
Return
09/28/25
1 Stopover (JFK)
B60504, B62677
07h 18min
Frontier Airlines ?
$436
Jacksonville, Florida
San Juan (Puerto Rico)
Outbound
10/18/25
1 Stopover (DFW)
AA2789, AA2437
08h 31min
Return
11/17/25
1 Stopover (CLT)
AA2150, AA3235
05h 47min
American Airlines ?
$443
Prices based on recent searches, subject to last-minute changes
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Tips and tricks to help you find cheap flights from Jacksonville, Florida to San Juan (Puerto Rico)

Favorite airline: Frontier Airlines
The majority of passengers on the route Jacksonville, Florida – San Juan (Puerto Rico) prefer to fly with Frontier Airlines.
Frontier Airlines
46 %
American Airlines
38 %
United Airlines
15 %
Direct flights are the cheapest connection
Compared to direct flights, flights with a stopover on this route are on average 46 % more expensive.
non stop flight
1 stop
2 stops
03h 07min
05h 36min
16h 24min
$256
$472
$1,280
The favorite connection is non-stop
46 % of all bookings on the route Jacksonville, Florida to San Juan (Puerto Rico) are for non-stop flights.
Route
bookings
Direct flights
03h 07min, from $256
46 %
1 stopover Charlotte Douglas International Airport, NC
05h 36min, from $472
31 %
1 stopover Houston - George Bush Intercontinental Airport, TX
08h 42min, from $574
15 %

Important flight information

Flight information: Jacksonville, Florida - San Juan (Puerto Rico)

Roundtrip from $245.85
Distance 2076 km
Departure airport Airport Jacksonville, Florida (JAX)
Arrival airport Airport San Juan - Luis Muñoz Marín International Airport (SJU)
Destination country Flights to Puerto Rico
Alternative flights to San Juan (Puerto Rico)
Flight destinations with a similar price